Test Code 2522799039 Uncovering Rare Obesity Gene Panel
Clinical System Name
Uncovering Rare Obesity Gene Panel
Description
Seattle Children’s Hospital is retiring clinical ordering of the Uncovering Rare Obesity Gene Panel. Our Laboratory Stewardship Committee determined that the panel is of low clinical utility and patients should be referred to Clinical Genetics for genetic test coordination (see details below).
Historically, patients that were ≤18 years of age (BMI ≥97th percentile) or ≥19 years of age (BMI ≥40) with a history of childhood obesity were eligible to receive PreventionGenetics’ Uncovering Rare Obesity Gene Panel.
In 2024, representatives from Endocrinology, Nutrition, Clinical Genetics, and the Laboratory Stewardship Committee collaborated to review the clinical utility of the sponsored genetic panel and current clinical practice guidelines. According to the 2023 American Academy of Pediatrics clinical practice guidelines, patients with severe obesity (defined as a BMI ≥ 120% of the 95th percentile) with onset before age 5 and/or hyperphagia may be evaluated for a genetic cause. For patients with intellectual disability, developmental delay, and/or congenital anomalies, the 2021 American College of Medical Genetics and Genomics clinical practice guidelines strongly recommend exome or genome sequencing.
To align with current clinical practice guidelines, the improved genetic testing algorithm for pediatric obesity is as follows:
- Patient is evaluated in Endocrinology/Nutrition/Another clinic. Genetic testing is recommended.
- Patient is referred to Clinical Genetics.
- Patients with severe obesity with onset before age 5 and/or hyperphagia will be evaluated for a targeted panel* to inform pharmacotherapy.
- Patients with concerns beyond obesity (such as intellectual disability, developmental delay, congenital anomalies, etc.) will be evaluated for broader testing such as exome or genome sequencing.
*The targeted panel will consist of MC4R, POMC, PCSK1, LEPR, and BBS genes to inform eligibility for setmelanotide. In December 2024, the FDA approved setmelanotide use in patients as young as 2 years old with melanocortin-4 receptor (MC4R) pathway deficiencies caused by variants in MC4R, POMC, PCSK1, LEPR, and BBS genes.
If a provider wishes to discuss Uncovering Rare Obesity Gene Panel ordering further, a Laboratory Genetic Counselor may be reached at LabGC@seattlechildrens.org.
References
- Rhythm Pharmaceuticals, Inc. “Rhythm Pharmaceuticals announces FDA approval of IMCIVREE® (setmelanotide) for patients as young as 2 years old.” GlobeNewswire News Room (2024). https://www.globenewswire.com/news-release/2024/12/20/3000811/0/en/Rhythm-Pharmaceuticals-Announces-FDA-Approval-of-IMCIVREE-setmelanotide-for-Patients-as-Young-as-2-Years-Old.html. (Accessed: 15th May 2025)
- Hampl, Sarah E et al. “Clinical Practice Guideline for the Evaluation and Treatment of Children and Adolescents With Obesity.” Pediatrics vol. 151,2 (2023): e2022060640. doi:10.1542/peds.2022-060640
- Manickam, Kandamurugu et al. “Exome and genome sequencing for pediatric patients with congenital anomalies or intellectual disability: an evidence-based clinical guideline of the American College of Medical Genetics and Genomics (ACMG).” Genetics in medicine : official journal of the American College of Medical Genetics vol. 23,11 (2021): 2029-2037. doi:10.1038/s41436-021-01242-6
Sample Requirements
Specimen: Whole Blood
Container(s): Lavender Top/EDTA, Yellow/ACD
Preferred Vol: 5 mL
Minimum Vol: 3 mL (1 mL for small infants)
Specimen: Buccal
Specimen: DNA
Container(s): Sterile plastic tube
Preferred Vol: 10 µg of purified DNA at a concentration of at least 100 ng/μL
Minimum Vol: 5 µg of purified DNA at a concentration of at least 100 ng/μL
Processing Instructions
Reject due to:
Spin: N
Aliquot: N
Temp: 2 - 4 C
Storage location: Do not spin. Deliver blood to the Send Outs refrigerator rack.
Off-site collection:
Stability
Specimen Type | Temperature | Time |
---|---|---|
Whole blood | Room temp | 3 d |
Whole blood | Refrigerated | 7 d |
Whole blood | Frozen | N |
Extracted DNA | Room temp | 3-4 d |
Extracted DNA | Refrigerated | 1 y |
Extracted DNA | Frozen | Indefinitely |
Availability
STAT | Performed | TAT |
---|---|---|
N | Drawn daily | 3-4 w |
Performing Laboratory
PreventionGenetics
3800 South Business Park Avenue
Marshfield, WI 54449
Phone Number: (715) 387-0484
Department
Department: Send Outs/Genetic
Phone: (206) 987-2563
Reference Range
Interpretive report provided.
Methodology
This panel typically provides 99.92% coverage of all coding exons of the genes plus 10 bases of flanking noncoding DNA in all available transcripts along with other non-coding regions in which pathogenic variants have been identified at PreventionGenetics or reported elsewhere. We define coverage as ≥20X NGS reads or Sanger sequencing.
Special Instructions
A completed Uncovering Rare Obesity Gene Panel test requisition and a signed Informed Consent form are required to proceed with this testing. If approved for clinical order, please email completed paperwork to ReferenceLabTeam@seattlechildrens.org (Do not give family paperwork to family to drop off in lab).
Uncovering Rare Obesity Gene Panel Test Requisition and Patient Consent Form
Uncovering Rare Obesity Gene Panel Job Aid
Contact the LabGC team to discuss testing and/or obtain a copy of the required forms. LabGC@seattlechildrens.org
Clinical Utility
Obesity is defined as an increase in fat mass that is sufficient to adversely affect health and reduce longevity. In some cases, obesity is inherited by a monogenetic mechanism due to pathogenic variants in a single gene. Monogenic obesity can be non-syndromic, occurring as an isolated feature, or syndromic, occurring as a co-morbidity of a complex phenotype.
The phenotype of non-syndromic monogenic obesity is typically severe and early-onset. Infants experience rapid weight gain in the first year of life and reach a BMI > 3 standard deviations above the mean. Associated features include hyperphagia, increased linear growth, delayed puberty, preserved reproductive function, hypocortisolemia and hyperinsulinemia.
Syndromic obesity includes a heterogeneous group of disorders where excessive weight gain is accompanied by intellectual disability, developmental delays, and/or congenital anomalies. Examples include Bardet Biedl, Alstrom, and Borjeson-Forssman-Lehmann syndromes. This panel sequences genes with clinical and/or molecular evidence suggesting a role in human obesity.
Send Out Instructions
Reference Test Name: | Uncovering Rare Obesity Gene Panel |
Reference Test Number: | SP068 |
Instructions: |
Ship whole blood overnight, ambient temperature. PreventionGenetics accepts Saturday delivery |