Test Code LAB2971 DCM/LVNC Panel
Additional Codes
DCM/LVNC Pnl
Clinical System Name
DCM/LVNC Panel
Synonyms
DCM/LVNC Gene Panel
Dilated Cardiomyopathy (DCM)
Left Ventricular Noncompaction (LVNC)
Sample Requirements
Preferred Specimen: Whole Blood
Container(s): Lavender/EDTA
Preferred Vol: 5.0 mL
Minimum Vol: 2.0 mL (1.0 mL is acceptable for infants)
Alternative Specimen: DNA
Container(s): Sterile Plastic Tube
Preferred Vol: 5 µg at a concentration of ≥50 ng/µL AND a volume of ≥100 µL
Alternative Specimen: Buccal Swab
Processing Instructions
Reject due to:
Spin: N
Aliquot: N
Temp: 2 - 4 C
Storage location: Refrigerate in CPA refrigerator Send Outs rack. Samples drawn on a Friday can be refrigerated until Monday shipment. Samples drawn on a Friday before a Monday holiday must have DNA extraction.
Off-site collection: Send whole blood refrigerated.
Stability
Specimen Type | Temperature | Time |
---|---|---|
Whole Blood | Room temp | 3 d |
Whole Blood | Refrigerated | 7 d |
Whole Blood | Frozen | N |
Extracted DNA | Room temp | 3-4 d |
Extracted DNA | Refrigerated | 1 y |
Extracted DNA | Frozen | Indefinitely |
Availability
STAT | Performed | TAT |
---|---|---|
N | 4 w |
Performing Laboratory
GeneDx
207 Perry Parkway
Gaithersburg, MD 20877
Phone Number: (301) 519-2100
Department
Department: Send Outs/Genetic
Phone Number: (206) 987-2563
Methodology
Method: Next-generation sequencing with CNV calling (NGS-CNV)
The technical sensitivity of sequencing is estimated to be >99% at detecting single nucleotide events. It will not reliably detect deletions greater than 20 base pairs, insertions or rearrangements greater than 10 base pairs, or low-level mosaicism.
For TTN, sequencing of exons 1-171 and 199-363 only. The copy number assessment methods used with this test cannot reliably detect copy number variants of less than 500 base pairs or mosaicism and cannot identify balanced chromosome aberrations. Assessment of exon-level copy number events is dependent on the inherent sequence properties of the targeted regions, including shared homology and exon size. Gene specific exclusions for exon-level deletion/duplication testing for this panel are: mitochondrial gene(s), no copy number testing; ALMS1, EMD, HCN4, and TBX20 genes only whole gene deletions or duplications may be detected. SCN5A gene, exon level coverage for exons 2-12 and 21-28 only.
For mitochondrial gene testing, next-generation sequencing may not detect mtDNA point variants present at 10% heteroplasmy or lower.
Reference Range
Interpretive report is provided
Send Out Instructions
Reference Test Name: |
Dilated Cardiomyopathy Panel |
Reference Lab Test Code: | J554 |
Instructions: | Ship via FedEx Priority Overnight. Saturday deliveries are accepted. |
Description
This panel includes analysis of genes assocaited with Dilated cardiomyopathy (DCM) and Left ventricular noncompaction (LVNC).
This panel includes genes: ABCC9, ACTC1, ACTN2, ALMS1, ANKRD1, BAG3, CHRM2, CRYAB, CSRP3, DES, DMD, DOLK, DSC2, DSG2, DSP, DTNA, EMD, FKTN, FLNC, GATAD1, HCN4, ILK, LAMA4, LAMP2, LDB3, LMNA, LRRC10, MIB1, MTND1, MTND5, MTND6, MTTD, MTTG, MTTH, MTTI, MTTK, MTTL1, MTTL2, MTTM, MTTQ, MTTS1, MTTS2, MYBPC3, MYH6, MYH7, MYPN, NEBL, NEXN, NKX2-5, PLN, PRDM16, RAF1, RBM20, RYR2, SCN5A, SGCD, TAZ, TBX20, TCAP, TMPO, TNNC1, TNNI3, TNNT2, TPM1, TTN, TTR, TXNRD2, VCL
Clinical Utility
Dilated cardiomyopathy (DCM) is a disease of the heart muscle that is diagnosed based on the findings of both left ventricular enlargement and systolic dysfunction, resulting in a reduction in the myocardial force of contraction. This condition is primarily determined by echocardiogram to measure cardiac chamber dimensions, ventricular thickness, and ejection fraction. DCM usually presents with one or more of the following; i) heart failure with symptoms of congestion (edema, orthopnea or paroxysmal dyspnea), ii) reduced cardiac output, resulting in fatigue or dyspnea on exertion, arrhythmias and/or conduction system disease and iii) thromboembolic disease or stroke, mainly from left ventricular mural thrombus. However, individuals with DCM may also be asymptomatic. The prevalence of idiopathic DCM is at least 1/2,700 in the general population.
Left ventricular non-compaction (LVNC) is characterized by abnormal trabeculations in the left ventricle, most frequently at the apex. Prominent trabeculations and deep intertrabecular recesses give the myocardium a sponge-like appearance that can be detected using echocardiogram. LVNC can share the same clinical presentation as DCM, ranging from asymptomatic disease to progressive deterioration of cardiac function, arrhythmias, thromboembolic events, or sudden cardiac death. LVNC is a rare condition, which affects less than 0.3% of the population. While DCM/LVNC can be an isolated finding, it can also occur in association with neuromuscular disorders or mitochondrial myopathy. In addition, DCM/LVNC can be a presenting feature of various genetic syndromes, including Danon disease, Carvajal Syndrome, Barth syndrome, or Emery-Dreifuss muscular dystrophy.
A genetic diagnosis may have implications for treatment, management, recurrence risk, and family member testing.